Publications

The following is a collection of publications that have made use of the GSCID data. If your publication uses this data and isn't listed below, contact us.

Sobel Leonard A, McClain MT, et al.
Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification.

Journal of Virology. 2016 Dec 15; 90: 11247-11258.[more]

Chavda KD, Chen L, et al.
Comprehensive Genome Analysis of Carbapenemase-Producing Enterobacter Spp.: New Insights Into Phylogeny, Population Structure, and Resistance Mechanisms.

MBio. 2016 Dec 13; 7[more]

Patel MC, Wang W, et al.
Enterovirus D-68 Infection, Prophylaxis, and Vaccination in a Novel Permissive Animal Model, the Cotton Rat (Sigmodon Hispidus).

PloS One. 2016 Nov 01; 11: e0166336.[more]

Tran TM, Jones MB, et al.
Transcriptomic Evidence for Modulation of Host Inflammatory Responses During Febrile Plasmodium falciparum Malaria.

Scientific Reports. 2016 Aug 10; 6: 31291.[more]

McPhillie M, Zhou Y, et al.
New Paradigms for Understanding and Step Changes in Treating Active and Chronic, Persistent Apicomplexan Infections.

Scientific Reports. 2016 Jul 14; 6: 29179.[more]

Wu P, Feldman AS, et al.
Relative Importance and Additive Effects of Maternal and Infant Risk Factors on Childhood Asthma.

PloS One. 2016 Jul 01; 11: e0151705.[more]

Rojas LJ, Wright MS, et al.
Initial Assessment of the Molecular Epidemiology of BlaNDM-1 in Colombia.

Antimicrobial Agents and Chemotherapy. 2016 Jul 01; 60: 4346-50.[more]

Nelson MI, Wentworth DE, et al.
Evolutionary Dynamics of Influenza A Viruses in US Exhibition Swine.

The Journal of infectious Diseases. 2016 Jan 15; 213: 173-82.[more]

Tan Y, Hassan F, et al.
Molecular Evolution and Intra-clade Recombination of Enterovirus D68 During the 2014 Outbreak in the United States.

Journal of Virology. 2015 Dec 09;[more]

Bose ME, He J, et al.
Sequencing and Analysis of Globally Obtained Human Respiratory Syncytial Virus A and B Genomes.

PloS One. 2015 Dec 01; 10: e0120098.[more]

Stockwell TB, Heberlein-Larson LA, et al.
First Complete Genome Sequences of Two Keystone Viruses from Florida.

Genome Announcements. 2015 Dec 01; 3[more]

Stucker KM, Schobel SA, et al.
Haemagglutinin Mutations and Glycosylation Changes Shaped the 2012/13 Influenza A(H3N2) Epidemic, Houston, Texas.

Euro Surveillance : Bulletin Europeìen Sur Les Maladies Transmissibles = European Communicable Disease Bulletin. 2015 Dec 01; 20[more]

Lakdawala SS, Jayaraman A, et al.
The Soft Palate Is an Important Site of Adaptation for Transmissible Influenza Viruses.

Nature. 2015 Oct 01; 526: 122-5.[more]

Larkin EK, Gebretsadik T, et al.
Objectives, Design and Enrollment Results from the Infant Susceptibility to Pulmonary Infections and Asthma Following RSV Exposure Study (INSPIRE).

BMC Pulmonary Medicine. 2015 Jun 01; 15: 45.[more]

Magagula NB, Esona MD, et al.
Whole Genome Analyses of G1P[8] Rotavirus Strains from Vaccinated and Non-vaccinated South African Children Presenting With Diarrhea.

Journal of Medical Virology. 2015 Jan 01; 87: 79-101.[more]

Dugan VG, Emrich SJ, et al.
Standardized Metadata for Human Pathogen/vector Genomic Sequences.

PloS One. 2014 Dec 01; 9: e99979.[more]

Nyaga MM, Stucker KM, et al.
Whole-genome Analyses of DS-1-like Human G2P[4] and G8P[4] Rotavirus Strains from Eastern, Western and Southern Africa.

Virus Genes. 2014 Oct 01; 49: 196-207.[more]

Nelson MI, Balmaseda A, et al.
The Evolutionary Dynamics of Influenza A and B Viruses in the Tropical City of Managua, Nicaragua.

Virology. 2014 Jun 21; 462: 81-90.[more]

Zhou B, Lin X, et al.
Universal Influenza B Virus Genomic Amplification Facilitates Sequencing, Diagnostics, and Reverse Genetics.

Journal of Clinical Microbiology. 2014 May 01; 52: 1330-7.[more]

Derrick E. Fouts
Leptospiral Pathogenomics

Pathogens. 2014 Apr 10; 3: 280-308.[more]

Fries AC, Nolting JM, et al.
Genomic Analyses Detect Eurasian-lineage H10 and Additional H14 Influenza A Viruses Recovered from Waterfowl in the Central United States.

Influenza and Other Respiratory Viruses. 2014 Apr 02;[more]

Bankamp B, Liu C, et al.
Wild-type Measles Viruses With Non-standard Genome Lengths.

PloS One. 2014 Apr 01; 9: e95470.[more]

Dusek RJ, Hallgrimsson GT, et al.
North Atlantic Migratory Bird Flyways Provide Routes for Intercontinental Movement of Avian Influenza Viruses.

PloS One. 2014 Apr 01; 9: e92075.[more]

Karen E. Nelson
Book Chapter in Bioinformatics and Data Analysis in Microbiology

2014 Mar 01;[more]

Westgeest KB, Russell CA, et al.
Genomewide Analysis of Reassortment and Evolution of Human Influenza A(H3N2) Viruses Circulating Between 1968 and 2011.

Journal of Virology. 2014 Mar 01; 88: 2844-57.[more]

Karen E.Nelson
Next-Generation Sequencing, Metagenomes and the Human Microbiome

2014 Feb 01;[more]

Madupu R, Szpakowski S, et al.
Microbiome in Human Health and Disease.

Science Progress. 2013 Nov 01; 96: 153-70.[more]

Le MQ, Lam HM, et al.
Migration and Persistence of Human Influenza a Viruses, Vietnam, 2001-2008.

Emerging infectious Diseases. 2013 Nov 01; 19: 1756-65.[more]

Sant'anna FH, Borges LG, et al.
Genomic Analysis of Pandemic and Post-pandemic Influenza A PH1N1 Viruses Isolated in Rio Grande Do Sul, Brazil.

Archives of Virology. 2013 Oct 10;[more]

Abernathy E, Chen MH, et al.
Analysis of Whole Genome Sequences of 16 Strains of Rubella Virus from the United States, 1961-2009.

Virology Journal. 2013 Sep 01; 10: 32.[more]

Boyce WM, Schobel S, et al.
Complete Genome Sequence of a Reassortant H14N2 Avian Influenza Virus from California.

Genome Announcements. 2013 Sep 01; 1[more]

Lindsay LL, Kelly TR, et al.
Avian Influenza: Mixed Infections and Missing Viruses.

Viruses. 2013 Sep 01; 5: 1964-77.[more]

Hauser MJ, Dlugolenski D, et al.
Antiviral Responses by Swine Primary Bronchoepithelial Cells Are Limited Compared to Human Bronchoepithelial Cells Following Influenza Virus Infection.

PloS One. 2013 Jul 01; 8: e70251.[more]

Hall JS, Teslaa JL, et al.
Evolution of a Reassortant North American Gull Influenza Virus Lineage: Drift, Shift and Stability.

Virology Journal. 2013 Jun 06; 10: 179.[more]

Zhou B, Pearce MB, et al.
Asparagine Substitution at PB2 Residue 701 Enhances the Replication, Pathogenicity, and Transmission of the 2009 Pandemic H1N1 Influenza A Virus.

PloS One. 2013 Jun 01; 8: e67616.[more]

Ramanunninair M, Le J, et al.
Molecular Signature of High Yield (growth) Influenza a Virus Reassortants Prepared as Candidate Vaccine Seeds.

PloS One. 2013 Jun 01; 8: e65955.[more]

Saira K, Lin X, et al.
Sequence Analysis of In Vivo Defective-interfering (DI)-like RNA of Influenza A H1N1 Pandemic Virus.

Journal of Virology. 2013 May 15;[more]

Keitel WA, Piedra PA, et al.
Rapid Research Response to the 2009 A(H1N1)pdm09 Influenza Pandemic (Revised).

BMC Research Notes. 2013 May 03; 6: 177.[more]

Li K, Bihan M, et al.
Analyses of the Stability and Core Taxonomic Memberships of the Human Microbiome.

PloS One. 2013 May 01; 8: e63139.[more]

Das SR, Hensley SE, et al.
Defining Influenza A Virus Hemagglutinin Antigenic Drift by Sequential Monoclonal Antibody Selection.

Cell Host & Microbe. 2013 Mar 13; 13: 314-23.[more]

Haft DH, Selengut JD, et al.
TIGRFAMs and Genome Properties in 2013.

Nucleic Acids Research. 2013 Jan 01; 41: D387-95.[more]

Krampis K, Booth T, et al.
Cloud BioLinux: Pre-configured and On-demand Bioinformatics Computing for the Genomics Community.

BMC bioinformatics. 2012 Dec 01; 13: 42.[more]

Gilchrist CA, Ali IK, et al.
A Multilocus Sequence Typing System (MLST) Reveals a High Level of Diversity and a Genetic Component to Entamoeba histolytica Virulence.

BMC microbiology. 2012 Dec 01; 12: 151.[more]

Joardar V, Abrams NF, et al.
Sequencing of Mitochondrial Genomes of Nine Aspergillus and Penicillium Species Identifies Mobile Introns and Accessory Genes as Main Sources of Genome Size Variability.

BMC Genomics. 2012 Sep 01; 13: 698.[more]

Faix DJ, Hawksworth AW, et al.
Decreased Serologic Response In Vaccinated Military Recruits During 2011 Correspond to Genetic Drift In Concurrent Circulating Pandemic A/H1N1 Viruses.

PloS one. 2012 Sep 01; 7: e34581.[more]

de Filippis I, de Lemos AP, et al.
Molecular Epidemiology of Neisseria meningitidis Serogroup B in Brazil.

PloS One. 2012 Jul 01; 7: e33016.[more]

Chang HW, Egberink HF, et al.
Spike Protein Fusion Peptide and Feline Coronavirus Virulence.

Emerging infectious Diseases. 2012 Jul 01; 18: 1089-95.[more]

Wang S, Sundaram JP, et al.
VIGOR Extended to Annotate Genomes for Additional 12 Different Viruses.

Nucleic Acids Research. 2012 Jul 01; 40: W186-92.[more]

Vivien G Dugan, Kazima Saira, et al.
Large-scale Sequencing and the Natural History of Model Human RNA Viruses

2012 Jun 01; 0: 563-573.[more]

Fedorova ND, Moktali V, et al.
Bioinformatics Approaches and Software for Detection of Secondary Metabolic Gene Clusters.

Methods In Molecular Biology (Clifton, N.J.). 2012 Mar 01; 944: 23-45.[more]

Gillespie, J. J., Joardar, V., et al.
A Rickettsia Genome Overrun by Mobile Genetic Elements Provides Insight Into the Acquisition of Genes Characteristic of an Obligate Intracellular Lifestyle.

Journal of bacteriology. 2012 Jan 01; 194(2): 376-94.[more]

Klaassen, C. H., Gibbons, J. G., et al.
Evidence for Genetic Differentiation and Variable Recombination Rates Among Dutch Populations of the Opportunistic Human Pathogen Aspergillus Fumigatus.

Molecular ecology. 2012 Jan 01; 21(1): 57-70.[more]

Lam, T. T., Ip, H. S., et al.
Migratory Flyway and Geographical Distance Are Barriers to the Gene Flow of Influenza Virus Among North American Birds.

Ecology letters. 2012 Jan 01; 15(1): 24-33.[more]

Bahl J, Nelson MI, et al.
Temporally Structured Metapopulation Dynamics and Persistence of Influenza A H3N2 Virus In Humans.

Proceedings of the National Academy of Sciences of the United States of America. 2011 Nov 29; 108: 19359-64.[more]

Myers, C. A., Kasper, M. R., et al.
Dual Infection of Novel Influenza Viruses A/H1N1 and A/H3N2 In a Cluster of Cambodian Patients.

The American journal of tropical medicine and hygiene. 2011 Nov 01; 85(5): 961-3.[more]

McDonald SM, Davis K, et al.
Intra-genotypic Diversity of Archival G4P[8] Human Rotaviruses from Washington, DC.

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2011 Oct 01; 11: 1586-94.[more]

Haft, D. H., Varghese, N., et al.
GlyGly-CTERM and Rhombosortase: a C-terminal Protein Processing Signal In a Many-to-one Pairing With a Rhomboid Family Intramembrane Serine Protease.

PloS one. 2011 Aug 01; 6(12): e28886.[more]

Dwyer, D. E., Dwyer DE
Surveillance of Illness Associated With Pandemic (H1N1) 2009 Virus Infection Among Adults Using a Global Clinical Site Network Approach: the INSIGHT FLU 002 and FLU 003 Studies.

Vaccine. 2011 Jul 22; 29: B56-62.[more]

Holmes, E. C., Ghedin, E., et al.
Extensive Geographical Mixing of 2009 Human H1N1 Influenza A Virus In a Single University Community.

Journal of virology. 2011 Jul 01; 85(14): 6923-9.[more]

Vlasova, A. N., Halpin, R., et al.
Molecular Characterization of a New Species In the Genus Alphacoronavirus Associated With Mink Epizootic Catarrhal Gastroenteritis.

The Journal of general virology. 2011 Jun 01; 92(0): 1369-79.[more]

Ghedin, E., Laplante, J., et al.
Deep Sequencing Reveals Mixed Infection With 2009 Pandemic Influenza A (H1N1) Virus Strains and the Emergence of Oseltamivir Resistance.

The Journal of infectious diseases. 2011 Jan 15; 203(2): 168-74.[more]

Donati, C., Hiller, N. L., et al.
Structure and Dynamics of the Pan-genome of Streptococcus pneumoniae and Closely Related Species

Genome Biol. 2010 Oct 29; 11(10): R107.[more]

Zhou, B., Li, Y., et al.
PB2 Residue 158 Is a Pathogenic Determinant of Pandemic-H1N1 and H5 Influenza A Viruses In Mice

J Virol. 2010 Oct 20;[more]

Wang, S., Sundaram, J. P., et al.
VIGOR, an Annotation Program for Small Viral Genomes

BMC Bioinformatics. 2010 Sep 07; 11(1): 451.[more]

Adams, M. D., Chan, E. R., et al.
Genomewide Analysis of Divergence of Antibiotic Resistance Determinants In Closely Related Isolates of Acinetobacter Baumannii

Antimicrob Agents Chemother. 2010 Sep 01; 54(9): 3569-77.[more]

Xiao, L., Glass, J. I., et al.
Detection and Characterization of Human Ureaplasma Species and Serovars by Real-time PCR

Journal of clinical microbiology. 2010 Aug 01; 48(8): 2715-23.[more]

Bulach, D., Halpin, R., et al.
Molecular Analysis of H7 Avian Influenza Viruses from Australia and New Zealand: Genetic Diversity and Relationships - 1976 to 2007

J Virol. 2010 Jul 28; 84(19): 9957-66.[more]

Lorenzi, H. A., Puiu, D., et al.
New Assembly, Reannotation and Analysis of the Entamoeba histolytica Genome Reveal New Genomic Features and Protein Content Information

PLoS Negl Trop Dis. 2010 Jun 01; 4(6): e716.[more]

Ghedin, E., Wentworth, D. E., et al.
Unseasonal Transmission of H3N2 Influenza A Virus During the Swine-origin H1N1 Pandemic.

Journal of virology. 2010 Jun 01; 84(11): 5715-8.[more]

Eckerle, L. D., Becker, M. M., et al.
Infidelity of SARS-CoV Nsp14-exonuclease Mutant Virus Replication Is Revealed by Complete Genome Sequencing

PLoS Pathog. 2010 May 06; 6(5): e1000896.[more]

Eppinger, M., Guo, Z., et al.
Draft Genome Sequences of Yersinia pestis Isolates from Natural Foci of Endemic Plague In China

J Bacteriol. 2009 Dec 01; 191(24): 7628-9.[more]

Nelson, M., Spiro, D., et al.
The Early Diversification of Influenza A/H1N1pdm

PLoS Curr Influenza. 2009 Dec 01;: RRN1126.[more]

McDonald, S. M., Matthijnssens, J., et al.
Evolutionary Dynamics of Human Rotaviruses: Balancing Reassortment With Preferred Genome Constellations

PLoS Pathog. 2009 Oct 01; 5(10): e1000634.[more]

Wywial, E., Haven, J., et al.
Fast, Adaptive Evolution at a Bacterial Host-resistance Locus: the PFam54 Gene Array In Borrelia burgdorferi

Gene. 2009 Sep 15; 445(1): 26-37.[more]

Fricke, W. F., McDermott, P. F., et al.
Antimicrobial Resistance-conferring Plasmids With Similarity to Virulence Plasmids from Avian Pathogenic Escherichia coli Strains In Salmonella enterica Serovar Kentucky Isolates from Poultry

Appl Environ Microbiol. 2009 Sep 01; 75(18): 5963-71.[more]

Fricke, W. F., Welch, T. J., et al.
Comparative Genomics of the IncA/C Multidrug Resistance Plasmid Family

J Bacteriol. 2009 Aug 01; 191(15): 4750-7.[more]

Lefébure T, Stanhope MJ
Pervasive, Genome-wide Positive Selection Leading to Functional Divergence In the Bacterial Genus Campylobacter.

Genome research. 2009 Jul 01; 19: 1224-32.[more]

Ghedin, E., Fitch, A., et al.
Mixed Infection and the Genesis of Influenza Diversity

J Virol. 2009 Jun 24;[more]

Nelson, M. I., Simonsen, L., et al.
The Origin and Global Emergence of Adamantane Resistant A/H3N2 Influenza Viruses

Virology. 2009 Jun 05; 388(2): 270-8.[more]

Fedorova, N. D., Harris, S., et al.
Using ACGH to Study Intraspecific Genetic Variability In Two Pathogenic Molds, Aspergillus fumigatus and Aspergillus flavus

Med Mycol. 2009 Mar 17;: 1-8.[more]

Song, H., Hwang, J., et al.
Simple Sequence Repeat (SSR)-based Gene Diversity In Burkholderia pseudomallei and Burkholderia mallei

Mol Cells. 2009 Feb 01; 27(2): 237-41.[more]

Beare, P. A., Unsworth, N., et al.
Comparative Genomics Reveal Extensive Transposon-mediated Genomic Plasticity and Diversity Among Potential Effector Proteins Within the Genus Coxiella

Infect Immun. 2009 Feb 01; 77(2): 642-56.[more]

Djikeng, A., Spiro, D.
Advancing Full Length Genome Sequencing for Human RNA Viral Pathogens

Future Virol. 2009 Jan 01; 4(1): 47-53.[more]

Mabey Gilsenan, J. E., Atherton, G., et al.
Aspergillus Genomes and the Aspergillus Cloud

Nucleic Acids Res. 2009 Jan 01; 37(0): D509-14.[more]

Lorenzi, H., Thiagarajan, M., et al.
Genome Wide Survey, Discovery and Evolution of Repetitive Elements In Three Entamoeba Species

BMC Genomics. 2008 Dec 10; 9(1): 595.[more]

Alekseev, K. P., Vlasova, A. N., et al.
Bovine-Like Coronaviruses Isolated From Four Species Of Captive Wild Ruminants Are Homologous To Bovine Coronaviruses Based On Complete Genomic Sequences

J Virol. 2008 Oct 08; 82(24): 12422-31.[more]

Rasko, D. A., Rosovitz, M. J., et al.
The Pan-genome Structure of Escherichia Coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates

J Bacteriol. 2008 Aug 01; 190(20): 6881-93.[more]

Nelson, M. I., Edelman, L., et al.
Molecular Epidemiology of A/H3N2 and A/H1N1 Influenza Virus During a Single epidemic Season In the United States

PLoS Pathog. 2008 Aug 01; 4(8): e1000133.[more]

Margos, G., Gatewood, A. G., et al.
MLST of Housekeeping Genes Captures Geographic Population Structure and Suggests a European Origin of Borrelia burgdorferi

Proc Natl Acad Sci U S A. 2008 Jun 24; 105(25): 8730-5.[more]

Dugan, V.G., Chen, R., et al.
The Evolutionary Genetics and Emergence of Avian Influenza Viruses In Wild Birds

PLoS Pathog. 2008 May 30; 4(5): e1000076.[more]

Rambaut, A., Pybus, O. G., et al.
The Genomic and Epidemiological Dynamics of Human Influenza A Virus

Nature. 2008 May 29; 453(7195): 615-9.[more]

Boni, M. F., Zhou, Y., et al.
Homologous Recombination Is Very Rare or Absent In Human Influenza A Virus

J Virol. 2008 May 01; 82(10): 4807-11.[more]

Tumapa, S., Holden, M. T., et al.
Burkholderia pseudomallei Genome Plasticity Associated With Genomic Island Variation

BMC Genomics. 2008 Apr 25; 9(1): 190.[more]

Kraiczy, P., Seling, A., et al.
Borrelia burgdorferi Complement Regulator-acquiring Surface Protein 2 (CspZ) as a Serological Marker of Human Lyme Disease

Clin Vaccine Immunol. 2008 Mar 01; 15(3): 484-91.[more]

Nelson, M. I., Viboud, C., et al.
Multiple Reassortment Events In the Evolutionary History of H1N1 Influenza A Virus Since 1918

PLoS Pathog. 2008 Feb 15; 4(2): e1000012.[more]

Fedorova, N.D., Nierman, W.C., et al.
A Comparative View of the Genome of Aspergillus fumigatus

The Aspergilli Genomics, Medical Aspects, Biotechnology, and Research Methods. 2008 Feb 01;: 25-42.[more]

Bao, Y., Bolotov, P., et al.
The Influenza Virus Resource at the National Center for Biotechnology Information

J Virol. 2008 Jan 01; 82(2): 596-601.[more]

Boyd, E. F., Cohen, A. L., et al.
Molecular Analysis of the Emergence of Pandemic Vibrio parahaemolyticus

BMC Microbiol. 2008 Jan 01; 8: 110.[more]

Patron, N. J., Waller, R. F., et al.
Origin and Distribution of Epipolythiodioxopiperazine (ETP) Gene Clusters In Filamentous Ascomycetes

BMC Evol Biol. 2007 Sep 26; 7(1): 174.[more]

Nelson, M. I., Simonsen, L., et al.
Phylogenetic Analysis Reveals the Global Migration of Seasonal Influenza A Viruses

PLoS Pathog. 2007 Sep 14; 3(9): 1220-8.[more]

Eppinger, M., Rosovitz, M. J., et al.
The Complete Genome Sequence of Yersinia pseudotuberculosis IP31758, the Causative Agent of Far East Scarlet-like Fever

PLoS Genet. 2007 Aug 31; 3(8): e142.[more]

Auerbach, R. K., Tuanyok, A., et al.
Yersinia pestis Evolution on a Small Timescale: Comparison of Whole Genome Sequences from North America

PLoS ONE. 2007 Aug 22; 2(1): e770.[more]

Zhang, X., Hasoksuz, M., et al.
Quasispecies of Bovine Enteric and Respiratory Coronaviruses Based on Complete Genome Sequences and Genetic Changes After Tissue Culture Adaptation

Virology. 2007 Jun 20; 363(1): 1-10.[more]

Allan, G., Williams, A., Rabinowicz, P., Chan, A., Ravel, J., Keim, P.
Worldwide Genotyping of Castor Bean Germplasm (Ricinus communis L.) Using AFLPs and SSRs

Genet Resour Crop Evol.. 2007 Jun 01; 55(3): 365-378.[more]

Salzberg, S. L., Kingsford, C., et al.
Genome Analysis Linking Recent European and African Influenza (H5N1) Viruses

Emerg Infect Dis. 2007 May 01; 13(5): 713-8.[more]

Hasoksuz, M., Alekseev, K., et al.
Biologic, Antigenic, and Full-length Genomic Characterization of a Bovine-like Coronavirus Isolated from a Giraffe

J Virol. 2007 May 01; 81(10): 4981-90.[more]

Tiyawisutsri, R., Holden, M. T., et al.
Burkholderia Hep_Hap Autotransporter (BuHA) Proteins Elicit a Strong Antibody Response During Experimental Glanders but Not Human Melioidosis

BMC Microbiol. 2007 Mar 15; 7(1): 19.[more]

Welch, T. J., Fricke, W. F., et al.
Multiple Antimicrobial Resistance In Plague: an Emerging Public Health Risk

PLoS One. 2007 Mar 01; 2(3): e309.[more]

Zhang, X., Hasoksuz, M., et al.
Complete Genomic Sequences, a Key Residue In the Spike Protein and Deletions In Nonstructural Protein 3b of US Strains of the Virulent and Attenuated Coronaviruses, Transmissible Gastroenteritis Virus and Porcine Respiratory Coronavirus

Virology. 2007 Feb 20; 358(2): 424-35.[more]

Carlton, J. M., Hirt, R. P., et al.
Draft Genome Sequence of the Sexually Transmitted Pathogen Trichomonas vaginalis

Science. 2007 Jan 12; 315(5809): 207-12.[more]

Rasko, D. A., Rosovitz, M. J., et al.
Complete Sequence Analysis of Novel Plasmids from Emetic and Periodontal Bacillus cereus Isolates Reveals a Common Evolutionary History Among the B. Cereus-group Plasmids, Including Bacillus anthracis PXO1

J Bacteriol. 2007 Jan 01; 189(1): 52-64.[more]

Rokas, A., Payne, G., et al.
What Can Comparative Genomics Tell Us About Species Concepts In the Genus Aspergillus?

Stud Mycol. 2007 Jan 01; 59: 11-7.[more]

Nelson, M. I., Simonsen, L., et al.
Stochastic Processes Are Key Determinants of Short-Term Evolution In Influenza A Virus

PLoS Pathog. 2006 Dec 01; 2(12): e125.[more]

Wortman, J. R., Fedorova, N., et al.
Whole Genome Comparison of the A. fumigatus Family

Med Mycol. 2006 Sep 01; 44: 3-7.[more]

Salzberg, S., Ghedin, E., et al.
Shared Data Are Key to Beating Threat from Flu

Nature. 2006 Mar 30; 440(7084): 605.[more]

Wolf, Y. I., Viboud, C., et al.
Long Intervals of Stasis Punctuated by Bursts of Positive Selection In the Seasonal Evolution of Influenza A Virus

Biol Direct. 2006 Feb 01; 1: 34.[more]

Seshadri, R., Samuel, J.
Genome Analysis of Coxiella burnetii Species: Insights Into Pathogenesis and Evolution and Implications for Biodefense

Ann N Y Acad Sci. 2005 Dec 01; 1063: 442-50.[more]

Ghedin, E., Sengamalay, N. A., et al.
Large-scale Sequencing of Human Influenza Reveals the Dynamic Nature of Viral Genome Evolution

Nature. 2005 Oct 05; 437(7062): 1162-6.[more]

Lal, K., Field, M. C., et al.
Identification of a Very Large Rab GTPase Family In the Parasitic Protozoan Trichomonas vaginalis

Mol Biochem Parasitol. 2005 Oct 01; 143(2): 226-35.[more]

Hall, N., Carlton, J.
Comparative Genomics of Malaria Parasites

Curr Opin Genet Dev. 2005 Sep 20; 15(6): 609-13.[more]

Loftus, B. J., Hall, N.
Entamoeba: Still More to Be Learned from the Genome

Trends Parasitol. 2005 Aug 11; 21(10): 453.[more]

Cui, L., Fan, Q., et al.
Gene Discovery In Plasmodium vivax Through Sequencing of ESTs from Mixed Blood Stages

Mol Biochem Parasitol. 2005 Aug 04; 144(1): 1-9.[more]

Holmes, E. C., Ghedin, E., et al.
Whole-Genome Analysis of Human Influenza A Virus Reveals Multiple Persistent Lineages and Reassortment Among Recent H3N2 Viruses

PLoS Biol. 2005 Jul 26; 3(9): e300.[more]

Wang, R., Arevalo-Herrera, M., et al.
Immune Responses to Plasmodium vivax Pre-erythrocytic Stage Antigens In Naturally Exposed Duffy-negative Humans: a Potential Model for Identification of Liver-stage Antigens

Eur J Immunol. 2005 May 02; 35(6): 1859-1868.[more]

Vanacova, S., Yan, W., et al.
Spliceosomal Introns In the Deep-branching Eukaryote Trichomonas vaginalis

Proc Natl Acad Sci U S A. 2005 Mar 22; 102(12): 4430-5.[more]

Loftus, B., Anderson, I., et al.
The Genome of the Protist Parasite Entamoeba histolytica

Nature. 2005 Feb 24; 433(7028): 865-8.[more]

Carlton, J., Silva, J., et al.
The Genome of Model Malaria Parasites, and Comparative Genomics

Curr Issues Mol Biol. 2005 Jan 01; 7(1): 23-37.[more]

Silva, J. C., Bastida, F., et al.
A Potentially Functional Mariner Transposable Element In the Protist Trichomonas vaginalis

Mol Biol Evol. 2005 Jan 01; 22(1): 126-34.[more]

Lyons, E. J., Carlton, J. M.
Mind the Gap: Bridging the Divide Between Clinical and Molecular Studies of the Trichomonads

Trends Parasitol. 2004 May 01; 20(5): 204-7.[more]

Carlton, J.
The Plasmodium vivax Genome Sequencing Project

Trends Parasitol. 2003 May 01; 19(5): 227-31.[more]

 
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